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Low-parameter phylogenetic estimation under the general Markov model
Markov invariants phylogenetic invariants base-composition rate-variation quartets supertrees
2012/5/2
In their 2008 and 2009 papers, Sumner and colleagues introduced the "squangles" - a small set of Markov invariants for phylogenetic quartets. The squangles are consistent with the general Markov model...
Steady-state parameter sensitivity in stochastic modeling via trajectory reweighting
Steady-state parameter sensitivity stochastic modeling trajectory reweighting
2012/2/28
Parameter sensitivity analysis is a powerful tool in the building and analysis of biochemical network models. For stochastic simulations, parameter sensitivity analysis can be computationally expensiv...