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南京农业大学农学院《Plant Physiology》发表黄骥教授“RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on Co-expression and Machine Learning”（图）
黄骥 基因 生物信息学 作物
2023/10/28
转录因子（TF）在基因表达调控中发挥了重要作用。鉴定转录因子的靶基因或与靶基因启动子结合的转录因子对于解析转录因子-靶基因模块的生物学功能和调控网络至关重要。2023年6月15日，作物生物信息学课题组在Plant Physiology发表了题为“RiceTFtarget: A Rice Transcription Factor-Target Prediction Server Based on C...
An integrated platform and meta-learner for feature engineering machine learning analysis and modeling of DNA, RNA and protein sequence data
python 工具包 蛋白质序列
2024/5/17
一个全面和通用的基于python的工具包，集成了特征提取、聚类、归一化、选择、降维、预测器构建、最佳描述符/模型选择、集成学习和DNA、RNA和蛋白质序列结果可视化的功能。用户只需要上传自己的数据集，并从中计算出自己需要的功能，所有必要的程序和优化设置都由软件自动完成。iLearn包括DNA、RNA和蛋白质的各种描述符，支持四种特征输出格式，以便于直接使用输出或与其他计算工具通信。总的来说，iLe...
A comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
棉花 纤维品质 QTL 遗传基因组
2024/4/16
本研究在sGK9708×0-153、LMY22×LY343、鲁绵研28×新陆早24等多个重组自交系群体中通过综合考评表型变异和共有置信区间筛选主效QTL，结果表明在A04、A07、A08和D08染色体上存在重要的纤维品质相关QTL。其中，通过SGK9708×0-153群体的转录组数据在纤维长度和强度QTL中分别检测到50和48个候选基因。这些基因的共表达网络模块在多个RIL群体中的基因对之间表现出...
HOUSTON — (Oct. 27, 2014) — At the urging of county election officials in Austin, Texas, a group of Rice University engineers and social scientists has pulled together a team of U.S. experts to head o...
Semiautomatic Planting Machine Based on Physical Properties of the Rush Seedling Fisheries
seedling production mechanization
2009/9/9
The purpose of this study is to develop a planting machine for rush seedlings. In rush seedling production systems, the use of plug seedlings has been widely popularized in Japan. However, the plantin...
A Method of Greening of Nursling Seedlings in a Nursery Chamber and Adaptability for the Transplanting Machine
Adaptability for transplanting machine Culture medium 4-day rice nursling seedling Green nursling seedling
2009/7/29
A method of greening of nursling seedlings raised in nursery chamber, characteristics of these seedlings and transplanting accuracy to paddy field were investigated. Rice cultivar Sasanishiki seed was...
Studies on the Seedling Raising Method in Giant-embryo Rice Cultivar ‘Koshiguruma’ and its Adaptability to Machine Transplanting
Raising method Transplanting precision Adaptability of machine transplanting Giant-embryo
2009/7/7
Giant-embryo rice cultivar ‘Koshiguruma’ which has been recently developed and released in the Niigata Prefecture, has the merit of producing a large amount of GABA, but has a defect of lower rate and...